Scaffold Ga0078894_10012049

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10012049
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6821
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085717	Metagenome	111	N
F103262	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100120492	F103262	GAGG	MKFDKNEFLCNFIYVCLSKEITFSDHDFYNFSRACNIKVDMKYAMENFFDNGALKSAIGSPTTFVTSKSLLGPCYVHPQGTNPKTVKYNISKIIQELKLDRQNISPDEKLKKITDYIELLS*
Ga0078894_100120497	F085717	GGA	MNRFNDDFDGYNNRKHRESLSKKSKYEEEEDLDELDIVADDISEKFMGSYGIHNVTPSKAKNAVVVYVDELSDISESVKKEIEDMAKPYSAIIKSSKLKNDNQHLEKYFKH*