Scaffold Ga0078894_10011538

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10011538
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6963
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F007848	Metagenome	343	Y
F017287	Metagenome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1001153810	F006255	GGA	MSELNQLMLEHEEFLESALDDMEYGGELSQEQVDCIRQACGKPRNKQVNPILRDVINDFGKIFGGNNA*
Ga0078894_1001153815	F007848	GGA	MKDFLGACLLGAVLGGMFAYGVPAKAQTIPMTNAQGYTTGSVQINGNKAQFVNNSGVTTQIATIYPNQIVIQTPSGVTTQVIGGTGYTVPASPQAPMTPRVMQ*
Ga0078894_100115385	F017287	AGG	MDTYIRRVFEGEAPCDKCTQAQDCKEYEWACRAFSYYVLHGTFQEYTVRHPTRGMFNKVFKEDDKALKTYMKSIRAKEQMGIVDLFEENPQEK*