Scaffold Ga0078894_10007491

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10007491
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8487
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F013526	Metagenome / Metatranscriptome	270	Y
F016958	Metagenome / Metatranscriptome	243	Y
F049499	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1000749112	F013526	AGGCGG	MKKNVLISFVTDADTDLQAIFNLNKIMQNLSEEELEKFDAFDVLDVE*
Ga0078894_1000749120	F016958	AGAAG	MKLTITSMNGKEMDMELPTKENVYYFIDLYKKNLKKNQRVKITCDLLGIDGYLQGTAPLR
Ga0078894_100074913	F049499	AGG	MKTMDYRMVDVLNADQLEVNDLIGIADEIVKVISIAPLSDGFSLVIENEFGEKDLIEILDDEQFELFILE*
Ga0078894_100074914	F000808	GAGG	MEYTYSLTTSYDGELVNTLRVSDMMEAVDAWNKCVDYGNAKDYATYNLSDPTGKMYTKTFYANGEVVIK*