Scaffold Ga0078894_10000610

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10000610
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25235
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014380	Metagenome / Metatranscriptome	263	Y
F072331	Metagenome / Metatranscriptome	121	N
F093878	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1000061022	F072331	N/A	LKPKKSKELIPNVAKDLGVSEQMVSDVTSFYWHEIRKSLSSLKHARVHVTNLGDFTIKHWKLDDKIDMLEKFKENFRQKGLQEIVTRFRTDETLFDLKAIRELMNEEDQRRDFIKLHKNNNEPKREHNQNLEIKGGNT*
Ga0078894_1000061023	F014380	N/A	MALVNQVDKRVKMSTWQIVKYQILTHCYLFDIPASEADLNCLTFLAMEGEQELTHFCNKAYDKKIFSSTQSVRNCLTKAEKKGLIKKEGKNKKKISINPTLNVYASGNILLDYKFLSVEA
Ga0078894_1000061024	F093878	N/A	MSEEQQEKAVPTKEEIVSFMREQIEVKSVQLELQELNTGLAVSRAEELKALAFIAQMTQPGGRPEGVPHTLTQEDLDNNPELASGGFKVGDEVIVPNEVPAEKQRTLKKNA*