Scaffold Ga0078894_10000321

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10000321
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32571
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002689	Metagenome / Metatranscriptome	536	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_1000032119	F000934	GAG	MSLQTILSICESVGINDQRFVGQTVSRNQKIVTSEVMTVVPFVFELRPMNYLLYSQNRGTLNGLRIADKSQEQYINFGSTGWLNYVKYQGDMTPAQIAACLWQSSSAQKNLVLGSLPSILSSAYLFRVGDFVQFGRYSYIVTADVLRGSSPTVVVPVHRNLIAGTASTVPLVAGQFGSTTAFTDTYTGITFPVVLREYPAYNLVPMTNDSFIQWDGAFKAFESVL*
Ga0078894_1000032120	F002085	N/A	VNNIAPVQNTNNIRVADFVRITSTSGTYMLSSCPYQITVPAVSANPFTAASILMKVGDVQRDIKSTANETTVSLSGIDATTLGFVLSQSIKGSKIEMWHGFFNTEGQLITTGGTGGLYQFFNGFITSFSITENWMEEAKAYLATVTVSASSTQLILQNRVAGRYTNNNSWQFFAPGDTSMNRVGFIETINYYFGKDAPANS*
Ga0078894_1000032130	F002689	N/A	MTTIDETEARLNSHEAVCALRYEQINARLKRLEGILIKAVGVMLVAMAGVIWASITPHIGR*