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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005662 Open in IMG/M |
| Scaffold ID | Ga0078894_10000078 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 55546 |
| Total Scaffold Genes | 80 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 68 (85.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003640 | Metagenome / Metatranscriptome | 475 | Y |
| F015965 | Metagenome | 250 | Y |
| F024254 | Metagenome | 206 | Y |
| F048114 | Metagenome | 148 | Y |
| F078231 | Metagenome | 116 | Y |
| F102518 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0078894_1000007814 | F015965 | AGG | MLVDSKKKELSVEAILMIAAQETKSPHPASSIYAAMVKEMNVLGTSVFREGNTLFIIHVGDGRTGVFRALNADTARNYLENSYSFIQGAYKLGFDVLVSEFEDPTIFNIFKAISRNPPQEGMGYRAERTKTGFRVTVKLGPKRAERE* |
| Ga0078894_1000007816 | F024254 | AGGA | MNFIEIFNYVAKVARPAHAKTSIAESMEDVFQEIGLDSLDGLVMLMYFDELYGIDDAISKEWTPKSVQELHDLVMAHKTKEPASMEEVVEVCK* |
| Ga0078894_1000007817 | F003640 | GGA | MALPLVYDPRYHTWDSWSSLMCEAYAAQQLSQNTPEEGWKEWAAGLKAIDIFVNEGIPGPYIYENWQDWAQALVGAVNESTQETAT* |
| Ga0078894_1000007869 | F102518 | AGAAGG | MKKIFIAVCAISALAGCSSNKEPHVTVQNLIMDRNIQPLSRGEQIDAIKDCQEAGLRARVIYGKRYVNGYSAETVIDVICSNRYAF* |
| Ga0078894_1000007873 | F078231 | GAG | MKTEPELIDIYAMFALMALMQKPSKVAKSKIDVAYEAYEQAQAMLDVREDFVNKRGD* |
| Ga0078894_1000007877 | F048114 | AGGAGG | LNYGKEGEGEDEHRHRCLVREVIKMRLKNRDSAYRWFNGYVDERGKRHKGWNELHPKSRLEADVREQWSKGNRGNEGEWK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |