Basic Information | |
---|---|
Taxon OID | 3300005661 Open in IMG/M |
Scaffold ID | Ga0058698_10020486 Open in IMG/M |
Source Dataset Name | Agave microbial communities from Guanajuato, Mexico - As.Sf.e |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2961 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Guanajuato, Mexico | |||||||
Coordinates | Lat. (o) | 21.7658 | Long. (o) | -100.163 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001042 | Metagenome / Metatranscriptome | 794 | Y |
F007252 | Metagenome / Metatranscriptome | 354 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0058698_100204864 | F001042 | AGGCGG | MATSHFIGGNEASDVPKNFSADADNKIVIDKLLVNKLTELLINSIYSVHISRRSEIFLTSLDMHLAEYSISNKNDTACREFSEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSANEAEVNNG* |
Ga0058698_100204866 | F007252 | AGTAG | MNNKVHPFFEDVTLLDFNMKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPPAPPVITSGHLEESLSGEELKQFLAKKKAQKLAYKVMCGDERVLVSDKTFAAF* |
⦗Top⦘ |