Scaffold Ga0073900_10164985

Overview

Basic Information

• Taxon OID: 3300005659
• Scaffold ID: Ga0073900_10164985
• Source Dataset Name: Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Kit
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1007
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location

• Location Name: Austria: Klosterneuburg
• Coordinates
  • Lat. (^o): 48.3
  • Long. (^o): 16.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040068	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073900_101649852	F040068	AGGA	MARSVPKCKRAAHVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDYRNPQEIPPIINEQMAAWPDPRPIGQPVFTPSPDYQYFLFNYFVLSVQSGSTTFDATASVGLNAPIASMDWYVDDVYVVSGLVSTVTMMGGVHTISVLITDDYGNQQTFSFEYEQGVDLGFNFITGEYFYFIDDVQFDFIGL*