Scaffold Ga0066842_10028278

Overview

Basic Information

• Taxon OID: 3300005658
• Scaffold ID: Ga0066842_10028278
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1010
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034892	Metagenome	173	Y
F100958	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066842_100282782	F034892	N/A	MAIDVGDLIRIRGKDWLGKRLGIVTEVRALVHDRSGTEYNAVTALIAGQYYTFPDEAFELVTAAERKKN*
Ga0066842_100282783	F100958	N/A	MVFHSDYEIDFEIYERREGDWRSQLLGHMTGISPEDAKERWMQAHEISDERNERIHAIPFVEEWR*