NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0056133_10238757

Scaffold Ga0056133_10238757


Overview

Basic Information
Taxon OID3300005653 Open in IMG/M
Scaffold IDGa0056133_10238757 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Inanidrilus leukodermatus Group 2 BELIZE.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1059
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002720Metagenome534Y
F007256Metagenome354Y

Sequences

Protein IDFamilyRBSSequence
Ga0056133_102387571F007256N/AVGQLVHTLPEGEPVVGVTLLAGEIYLVRLTERDQVEVYDVKTYCLQRRLTAPNVHGFTDMTSCEHNGCVYIGDHIVQCVHRLDVQGAVTRWTVNDVPLGLSVNAAHNVLVTCYVVRQIKEYSSRGDLLRELVL
Ga0056133_102387572F002720N/AGHTMCQSMVNIQSPTAEIRRGKKEEEERKKQDENIMVCRIT*

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