Scaffold Ga0079202_10061356

Overview

Basic Information

• Taxon OID: 3300005651
• Scaffold ID: Ga0079202_10061356
• Source Dataset Name: Marine algae microbial communities from Blueberry Hill - Blueberry Hill, Maine
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1414
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: USA: Blueberry Hill, Maine
• Coordinates
  • Lat. (^o): 44.342
  • Long. (^o): -68.065

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005043	Metagenome	413	Y
F089781	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079202_100613561	F089781	N/A	MTHFQAATTIGLRDKRFSLHPTVVLNAFLWNKWPADHAAGGNPTWLGNKMRVSGAAGKSGRHVWPLVNMGCGGGGQVMLVAGREIVHFHGMPDRINTCLASEIGQSQFWIGRDKENGTLLEGQRKTEVYLSATRSFERLVFFP*
Ga0079202_100613562	F005043	N/A	MCPSSLEINVSSSFSLNFRQGGSRKSQDLAWAACSVPRKSDQAAKNSEFCWMQGPGTECGLSIGFDAFLLSF*