Scaffold Ga0075038_11320809

Overview

Basic Information

• Taxon OID: 3300005650
• Scaffold ID: Ga0075038_11320809
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1873
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6137
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006433	Metagenome / Metatranscriptome	373	Y
F007657	Metagenome / Metatranscriptome	347	Y
F061592	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075038_113208091	F006433	N/A	MADTIYRIVQRDDDSFAVEIVRVGALPQTAAGFATEALAKGWIAQDQRLRSAADPFSTPAGRRWRGS*
Ga0075038_113208092	F007657	N/A	VSWITFEAAAGGLVVVQLRHVVAIYDEQGAVKLETASGGVHILKDITVRRAAAIVSKAEEAGLVRPET*
Ga0075038_113208093	F061592	AGGA	MSTGPADEPVQVDTSQANPVQADGEADAMKDQLRKDVASWREGRSDGSTRQATELSVAVTRSIVPPTTAKMKRAKPVATEIKSATTEKKPFGMSYDGTSRSDYIKLMISRGAR*