Basic Information | |
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Taxon OID | 3300005650 Open in IMG/M |
Scaffold ID | Ga0075038_10050007 Open in IMG/M |
Source Dataset Name | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2231 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom) |
Source Dataset Sampling Location | ||||||||
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Location Name | Alaska, USA | |||||||
Coordinates | Lat. (o) | 68.6137 | Long. (o) | -149.3144 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010345 | Metagenome / Metatranscriptome | 305 | Y |
F062651 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075038_100500071 | F010345 | N/A | AMGILARFWSYSIDTYGGAPLLLLINLIQLALLGWVLGAGFRARAMNGLSTDARRIAAAHRAEIWQKQVRPLALTFMLLGPGLGLGMSTLLGALGMGQLGDAMGTQTSADTLAALMAHAYREISYAYFLMVGGTFPMLLGPLIVLAARKLDEDGQDARGGEPDELLLHTMKSLLAVAEAQASRAQLDAARTQALLEQALRRGMAA* |
Ga0075038_100500073 | F062651 | AGGAG | MHKTILIVSLLIAIAGCAHDPPPATAAHDWEHGLDGSLSAQIAPVGPIESDVSAYNLIRRREQERALGSRDTLVELDEIVGSSSQVLSSALALPLFQAGVYLGQPPIIDKACAAARRVTHPALRSSGNVETVLQGCGALAVGKQSNDPCSEGEKKLREAYAQLAANKATDAGHSAADGVRMLRDRCPKMMAPLRTPVDPASHGFLIVWTLHANEAPPATFLVGQSAPGTAEAINEAFLRGVQAVKGIARNP* |
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