NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0056131_1167775

Scaffold Ga0056131_1167775


Overview

Basic Information
Taxon OID3300005648 Open in IMG/M
Scaffold IDGa0056131_1167775 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1046
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)51.321602Long. (o)12.394572Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064175Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0056131_11677751F064175N/ARCKDSDSDSIYCLTNVYLAVLYYTTGQYQKAIDHCTVVTSSRDHSQCSSHIVQGELLPKIDDDIDNALGLAVLYQYVRTTALNQQQQTQYVSVFSTELLAHYLYIRCQSVVKYRQFTQMSSADEVQRYEKCFNESSEMFVTDVIVFRSVRRAKYSANFENPTSSRERTKPVTSGQLDTSELVELLQGSAVEHLTIFRQLESQEISSVVTIVTTDFEALYAYKRGDYQRCLQLSTQNVHTLIGRTGWSDIFTCSECIQLMDDDLVCLIGLTLLLDKSCREDGRHVLISQLTLSLYLMTQCQLKLHHPVTSLAQTLDYIKVARHQLIQQLQLYTLGQLLLKLTEHKVLRY

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