Scaffold Ga0056131_1000581

Overview

Basic Information

• Taxon OID: 3300005648
• Scaffold ID: Ga0056131_1000581
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius clavatus LIZARD ISLAND.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9582
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019585	Metagenome	228	Y
F033246	Metagenome	178	Y
F043665	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056131_10005811	F019585	N/A	HPYSTLILGVFPLHQIAHVGRQPEQGPKLFGREIIFQEFQPMCC*
Ga0056131_100058112	F043665	N/A	MGVTQLHNVVYIICTGSSAIMTFNATTHERLADIVVKDLSSPGDIVACGRMSQLYVADSGKCVWRVWADGTGIQRWDKVSPASLSVTSTRLLVTSGDTKKLIQLDSVGNELRRVQLPDNMEPWHAVESPTTTFIVSHSNTQLSQYQISEVNKDGQVLRQFTSSRLSSLGFTPHIAIDSHGNVFVAHRVNRCILLLDAQLKLRRVIIDEHQLNYINKQPWRLCYREQTGQLLVALFRSVAVFDVLRR*
Ga0056131_10005813	F033246	N/A	VDAEIVSFGEDVSEREDRIVSQWREVSANEQHELREQVDTILRPLGFRTRLLVMERDNGIALYFFCMTLLAVTRLRDRWRSGQLRDILESLFTFLAGTEVYVVALTWPLSGYERCLDFFSSLQG*