Scaffold Ga0079203_1029914

Overview

Basic Information

• Taxon OID: 3300005647
• Scaffold ID: Ga0079203_1029914
• Source Dataset Name: Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2431
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Bantry Bay, Ireland
• Coordinates
  • Lat. (^o): 51.64
  • Long. (^o): -9.71

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055389	Metagenome	138	Y
F100271	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079203_10299141	F100271	N/A	MAVARGLAIVIPDEPFLYKLCNFGQDQVIVRKNSTLGFEEPYQGPMLATVLDEHHPKGGTDTSSDDASRDPLEDLDLSEAPEYLHKQIRDMLKTHSS
Ga0079203_10299142	F055389	AGG	VPDLALPGGTRKRRITRFLRRALRNYEIAATLGPCMRVMRSSRPVLDTGAGVNIVRTSVLPANWMAYADELTTPLPIRDANNHRLVKKYAKHLYVDTGGVRLFDRFLIFENLWVPCILGTEFIGQNIEAILPRLQKIVWQEHGRCTEELPRPTPILSCLNDGAWDRHWQDKPAKVRACKQVRVDGQQEEWIIATCDTSCMVTITPNAR*