Scaffold Ga0079203_1020436

Overview

Basic Information

• Taxon OID: 3300005647
• Scaffold ID: Ga0079203_1020436
• Source Dataset Name: Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3182
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Bantry Bay, Ireland
• Coordinates
  • Lat. (^o): 51.64
  • Long. (^o): -9.71

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013269	Metagenome	272	Y
F024709	Metagenome	204	Y
F048070	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079203_10204361	F013269	AGGAG	MITDDMVILDVNVNDKRGGIRVCVDDHEGPNGFALQLVLPNVVGRVYVVADLDVRIAGYYLMVELTFVTLLRLTQGLDYNGDLLAQAGLELAFAS*
Ga0079203_10204362	F048070	AGG	MAQGVRFESFASVDKSTSYSKHARMAEAYQLVLVHCGMTAVASSVVVTRRRKTESKCCAGRTRNPLGSVGTEGSLPSSVACADFGHAYVYGP*
Ga0079203_10204363	F024709	GGA	VAHAWVDQVTGLRRAVKRADSEGVESALAIIGQAVVCAVDGDASYKRFAQNLEAIQPEQVAAPTRFNAQSVLRRRAYDDGGPSGGALPSARNARARSVSQ*