Scaffold Ga0079203_1017142

Overview

Basic Information

• Taxon OID: 3300005647
• Scaffold ID: Ga0079203_1017142
• Source Dataset Name: Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3583
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Bantry Bay, Ireland
• Coordinates
  • Lat. (^o): 51.64
  • Long. (^o): -9.71

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023776	Metagenome	208	Y
F048070	Metagenome	148	Y
F104363	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079203_10171421	F048070	AGG	MAQGVGFVSLASVDKSASYSKHARIAVAYQLLLVHCGIATVPASVVVTKRRRTESKCCTGGGRSPLGSTGTEGSLPISVAGADFGHEYVYGP*
Ga0079203_10171422	F104363	GAGG	MDKSVTGNMDMLDSGYPRGIHDNVGHGCEHGLSATSSPWRLPFLPWYVLVLLPEKAHHQVACENFQGFPGVVVRPVVEPAHLSAIAVASLALA*
Ga0079203_10171425	F023776	N/A	VIRSDEEPLPIEEVPQFEDSPNDAEAYALRRGGVFLCSSESSAPISDRMKQFARFLMEEGTRKLAGSCVIVNDELPISLLQDKYR*