Scaffold Ga0077109_1044243

Overview

Basic Information

• Taxon OID: 3300005645
• Scaffold ID: Ga0077109_1044243
• Source Dataset Name: Brackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1532
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water → Brackish Water Microbial Communities From Lake Sakinaw,Canada

Source Dataset Sampling Location

• Location Name: Sakinaw Lake (SAK), BC, Canada
• Coordinates
  • Lat. (^o): 49.682207
  • Long. (^o): -124.005217
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038202	Metagenome / Metatranscriptome	166	N
F088891	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0077109_10442434	F038202	N/A	MKVLVTDIVYDTRDICDGHQWDQNELDLPSEMTLVIEGDVDIEDEIAEEIADAISDKTGWCVGSFNHEIL*
Ga0077109_10442435	F088891	N/A	MKILLILTVXLVGCNPTEPVDTTKVTQTFVDSKIRFVKVENCEYIVTSFQPLLITHKGLHKPQVINFVGN*