NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0077109_1039200

Scaffold Ga0077109_1039200


Overview

Basic Information
Taxon OID3300005645 Open in IMG/M
Scaffold IDGa0077109_1039200 Open in IMG/M
Source Dataset NameBrackish water microbial communities from Lake Sakinaw in Canada: eDNA_2 (120m)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1694
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Brackish Water → Brackish Water Microbial Communities From Lake Sakinaw,Canada

Source Dataset Sampling Location
Location NameSakinaw Lake (SAK), BC, Canada
CoordinatesLat. (o)49.682207Long. (o)-124.005217Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099161Metagenome / Metatranscriptome103N
F101167Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0077109_10392001F099161N/ALQDLKNKLKELQDALDKADDSNNPHESNRIRGEIQNTIKDIKREELKQPVSVERGKELFANMRRELGLDETISYKEFFDL*
Ga0077109_10392004F101167N/AMPKASKHKLYTLPSNFNEMNKFIEVNKIQLMEHIVASIEXAIDKKLSFVEIFSFKNSDFVVTLPTNQFKENLDNVYSXYIEKEQYELCIRVKSVESKLNSILDKITHEKKEKPSKKQK*

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