Scaffold Ga0078785_11057

Overview

Basic Information

• Taxon OID: 3300005625
• Scaffold ID: Ga0078785_11057
• Source Dataset Name: Activated sludge viral communities from EBPR reactors in Madison, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 919
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus subtilis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Activated Sludge → Activated Sludge Microbial Communities From Ebpr Reactors In The Us And Australia

Source Dataset Sampling Location

• Location Name: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.078418
  • Long. (^o): -89.386482

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051551	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078785_110572	F051551	N/A	MSKSELLGAIPASNAFIANAIQSSKETLRRNNGDEGDSSKALLKFPCDNDPDNDPAMFSSYDKYSHAQIMDILSGDEWSSSTE*