Scaffold Ga0068864_101820689

Overview

Basic Information

• Taxon OID: 3300005618
• Scaffold ID: Ga0068864_101820689
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 614
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004910	Metagenome / Metatranscriptome	419	Y
F066204	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068864_1018206891	F066204	GAGG	VLSDFGISEEIVASHLRLLAQMDAGEQLKFPPMDVPQHELRSKGFR
Ga0068864_1018206892	F004910	GGAG	MAISQRLVDPSREFIVSVRYSWQESYHAALLETDWSRMVELVQTAEFEIHKRRLELSKDHNGTQEEREAVVNALNGLRVLRMDAAASRERQSLK*