Scaffold Ga0068864_100497975

Overview

Basic Information

• Taxon OID: 3300005618
• Scaffold ID: Ga0068864_100497975
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1172
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F008441	Metagenome / Metatranscriptome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068864_1004979751	F002850	GGA	VTGIHADIDALKGLHGALARYRHAQRDVTARGEDQVRATRASLEEKASQLRVQLELCQGEYAGCRERAAQAGPEDLPVDCSGYARAVAQATERLEQIQRWQQRIDAEAGEFSGVAGRFAAML
Ga0068864_1004979752	F001698	AGG	MSGVVNDIEALAEFRSHLMRFNHDLAENFSTIQSHWRELGEVWRDDMYRLFGEALEEVLPGITAYLEATEGQEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGTGPANGTGRRDRNPR*
Ga0068864_1004979753	F008441	N/A	ERGDWDDVRALASFLASAGEETAAAELRLVLGNAIWQRHSEQLRVISNTMPPAAIGDAISALRAVLREVPEEYPDRNREVNRFLPPLAAAVGALMREQQVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGLCRRPDRDTT*