Scaffold Ga0068864_100000099

Overview

Basic Information

• Taxon OID: 3300005618
• Scaffold ID: Ga0068864_100000099
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85269
• Total Scaffold Genes: 162
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 141 (87.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034408	Metagenome / Metatranscriptome	175	Y
F056282	Metagenome	137	Y
F074512	Metagenome	119	Y
F091541	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068864_100000099114	F056282	AGG	MTLIDKPVEGVKTDARPHPAGAKGARLSLKEVAERAWKARMSPRLRAWATQVLAKANVSTGNRRQKGKAILDAYRAKVPYIADPVMGEFMETPDQTLCLDEGGLCFIGTDCDGSAIALAAAMMSIGIPAMIVGSSHKNPSDTPTHVFMAFEDDDGSWVRMDGTTKHEVGSAPPRKREWWVEPGAEAKERGEGDFVGMSGTNSFLGNSSPKERHPSISLLDLRYPTIR*
Ga0068864_100000099116	F091541	AGGAG	VSEEQILAADNRNGEVRRNEMAKQQNQSKKSPKAIIGRQIHTFQREKGLPQKAKFGLGQPAPKLDEVGLGSPEAKVGLAAAEKCIRCSFGNVPVIEEVVWTIPLPLTAEEALSTLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILAQGVGVHVFCEPMSFSTIGNAFSAPDTTVAPPPSPDVFTSNDLDNGAFPASVETDGSNFGPAVFEFGNPVWRAGWNFINAYQFQWRTSQRELVLNELAADVSYFGSFADAEAAGTSEVAIIEYVAAVNATYRSKGSATIFLPVNFRRVGSVNTTPGDATTNTGVFHPTRDFDLAPVTWGGMRFQGYGCRGQMYRPIESPCFLERGIPIGMLFQVQDAVHQAQMLEAVTINNEPLGINVSPDENLSDTTATGAAVMLEQTLDATPANVPQQTNVSRQVFKGGILKLAIKIKGWEMPGGWKAFCADSGLIPKAG*
Ga0068864_100000099117	F034408	AGGAG	MTQPRDDQIRNLALYAPKIAFGMVAGVPRVPFVDEIPVQFSSSTVNAPPVVNNFQNNLSQDTLIERISFNLFQQNSFPGSPFQSTYFNQLKQSGATGIGVQLQVYGGPKYIVSNTFVDLGNLADVLAVTWPAGWPLAKQSNVKVSAILTETPVSVPYNATLTFLGWQFLDKTLDDLSDDDCRDRLRSLGIETPDIKKLLLPK*
Ga0068864_100000099126	F074512	GGAGG	MHEFLIVSALIGATLLVVRSTIFRSVRRLYPALLECCQCSGTWIGAAAGVSGVASTGHGRVIDAIVVGAATSFLSMLADAILLHLLGDPSEGDQS*