Scaffold Ga0068864_100000025

Overview

Basic Information

• Taxon OID: 3300005618
• Scaffold ID: Ga0068864_100000025
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 250062
• Total Scaffold Genes: 242
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 145 (59.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004159	Metagenome / Metatranscriptome	450	Y
F105781	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068864_100000025143	F004159	AGGAG	MATNNQDDHERAAAGLDFDNPIREKAASLGQTVAENGPEALLEEIENLLPESWREQITTFPIAAVIIGVGVGVFLGMKKGDEIIAAGSSMISAAAIANVTSAMEKMGGMSGD*
Ga0068864_100000025159	F105781	GGAG	MRRKASQENQMERQAPSPVELLNDRRGRLSLHVVVFPLVLLLFGCPKAEPLTAQKAEEILRAYEVSTEPIYAEVPQRVWWSPKAPQDAYDVKALETLRNLERAGYLTVTESHDGDTTSYTGKVTQKGFTLIGTAPSNRGPCFRATICFKKIDGLRNFERHPNEPTTGHGDLVWHYERPTPMYELFTTKINKELQKPYASAVSFFWKDHAWHFDVMVRKSPV*