Scaffold Ga0068859_100234784

Overview

Basic Information

• Taxon OID: 3300005617
• Scaffold ID: Ga0068859_100234784
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1922
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006445	Metagenome / Metatranscriptome	373	Y
F065097	Metagenome	128	N
F068110	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068859_1002347841	F065097	AGGA	MPNHPNTDNENESASLDAEDWEIALKPYFGYPDAALDLARNLMTIRECLKTTPPDVPTAVAALNEAADSLFPLTSFHKGAHDLYRTYIEGRATRAHEALMQSLEVKF*
Ga0068859_1002347842	F068110	GGAGG	MHTSDKNSVLERRAAMMARLQQIHDHSAGEGTDEGAMIVTLEGYISGIPEFFTNDCHEAFRFRDREQAESFVAEFGDALLNPQVLDHP*
Ga0068859_1002347844	F006445	N/A	MKPIMTDDLLDQVSRIYERARVEVLTLLRSHEPAEHSVMPPREWMSASQLAEYWQLYNENNEPTTAGILKWAKRPADKFPLPHAYMGGLLRFNRDEVDQWARQEADRRRAQAEKRKLKIA