Scaffold Ga0068859_100009491

Overview

Basic Information

• Taxon OID: 3300005617
• Scaffold ID: Ga0068859_100009491
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9826
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041430	Metagenome	160	Y
F078345	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068859_1000094912	F041430	AGGAG	MNLTFRLTLSFLIVICFAGLTTAHDERLNIADFASNPGAFVGRTVEVQARVVAINADGQSLELYDSPSRTRISVQLAQLSKAERKALIRSDVREVLVRGQVSMVAGRMTIHAESVQWNDKETSK*
Ga0068859_1000094918	F078345	N/A	MELTAGAADNSVRKTYERLFYQYRRDKLLIVPNDDDWLLAAKIMYLLAQARRTPGKGKLKRLPPGASQRLALDVLIAVSARRWKAQVVTENWADFKAIQRYCNTTIIKAAQFFRR*