Scaffold Ga0068859_100000395

Overview

Basic Information

• Taxon OID: 3300005617
• Scaffold ID: Ga0068859_100000395
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43422
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013685	Metagenome	269	Y
F032806	Metagenome	179	Y
F052156	Metagenome / Metatranscriptome	143	Y
F081922	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068859_10000039524	F013685	AGGA	MKKLVKCLLLGVLIGDFLLPPTVQAQFTVFDPAQYSLQIERQIEEANRWLERVKQYSEQINKLAQQLSTMKGILGEAEKLVLHNANLTRTMAQIGQTVRDVFALKRAMETMVISRLNMIKSIKTRLMTGVFDPEADLRDFEDYLRNSIGRTSQNKIATMNRLAMFDATLARLYHDLQTAQARQAGAAQQLKQANEKLDAELAKPSSEQCASCISDLKQEIASCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVRATDEAWKSLNIVKDGVFQAIENGGMPK*
Ga0068859_10000039526	F032806	GGAG	MRARPVRPNIYLPVVRFGVADSDWFSVLLISCICYLAPVPFGITLLYIPLQMWTWLLATAGAIAFFNYIRIGRKPYWLQHQLKALFSNHRQYRFIPNSRKSKFDRLWITDQQEDGRSPPKPSVTINSLLLQHNNSVREAWEENGTALGL*
Ga0068859_10000039533	F081922	GGAGG	MRERGNIWPVIVVIAAALCVLVIVPLFIERQKAGRMGTVDAHVSIGDGEVSDGQSSGASNYRWPNGEVPRTVERLRDVTAVVIAASTFLVEESLHGRIPTDADDLLTGIGRRSLIPNEWRTDQPGVLLTSHATLHLRYSPRNLTVEVISVPNERVDGPAILIRIPDGENTAVGTRYFESMQLDGIVYPRPFTSIADIIASGWQPRLFKQTQIADSDRAQLEQWAKAATQQQAK*
Ga0068859_10000039534	F052156	AGGA	MSFRSRIEKIDADYFIPRPADEPDLDSFHAASRFLKDVSRSGSLLLSSSIAGYLFFRSGQIL