Scaffold Ga0068856_100384512

Overview

Basic Information

• Taxon OID: 3300005614
• Scaffold ID: Ga0068856_100384512
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1423
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F016609	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068856_1003845122	F001356	AGGAG	MPKTKQPPPTDLRYRQVRVDDLSKGRRGKHHDLVVGILQELEALSPDSAMEIPFADVGGIGLANLRSAVHCASVSRGLQIGTLADEKNFYIWKKRDTN*
Ga0068856_1003845123	F016609	GGAGG	MTEYKWHEVYKAALMETDWTKMQERIRAAETALHDRKLQFALDHGGTPDENHAIEDALHGLGILRSEVAARQESKRAS*