Scaffold Ga0074649_1101789

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1101789
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1037
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F069852	Metagenome	123	Y
F100033	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_11017891	F100033	GGAGG	MLEDKHCQIILKNEDEDTNKILMDFDLILRTNDKRTQYEYFDVYDYKNNQMVASGIE
Ga0074649_11017894	F069852	AGGGGG	MKIKVTKEDIENGEPGNSSECAISLALQRHYNTNNTFVSGAFDKDEPDIRVDDIPLKVCEKDINNVGSFIDLFDDYVFNEDVVIDETCIPRPFEFEVMEEK*
Ga0074649_11017895	F005373	N/A	ENINQIEDLEKKVLTLSSLLSQMCCHADEDTPAEYRTKHFKSTMDESYEYLEEIGYLKGDR*