Scaffold Ga0074649_1037544

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1037544
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2295
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_10375444	F031483	AGCAG	MNILKGKVKYTAGKVFEGQYGPSINAVITLDNGTEARVYGKADDEKLKALKKDDAVTVIHDGKSYKVAFDMVTANEIPEKIQTPTEGANVQQAANVPPKSNGKLTHDEITEKATLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF*
Ga0074649_10375445	F014956	N/A	MINIQDFALNVSLTICPNHIVEPLHLKKWWRQRGVGELEKYFYTGKKIDYAQEIDWKAISDHKKQMWYDSQNFQIQAGNEYSKR*
Ga0074649_10375447	F021732	N/A	MNITKYTCKCTLDKKLGHFVHVIFSYGFGLYGQTSPHSPEDNMEIHGWTFEPHDIDLELYPQITSRNLMPLVAENEMDWTILTNQSL*