Scaffold Ga0074649_1034676

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1034676
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2451
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065237	Metagenome / Metatranscriptome	128	Y
F082617	Metagenome	113	N
F084163	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_10346761	F084163	N/A	MALSGTHQVSGTYQPSNNDNLWVVEETSTGITSNFNFKFICDVKNTSGTLLSRLKVPPYFGTTDKGVFNISKVLSAYTTYDWNYEDSNSSGCTNSYFDYTLSFGYEYSSGATADIQVSTGVTDVTGNTVWNAALHPLAFINYSQDDYLMASGSTANFLTSLTSKRIHENQKDWLYALHNSNIAYLDISYSGGGTAQVTGTTHDITRFPIGANIPGGIPSGTTSYTITPKASGGNTIGAVYTINIDNRCSKYNSVD
Ga0074649_10346762	F065237	GGA	MPIIEFLNTLAFHNTITKQRMKRLEGAAAKGFESYVCACLNEML*
Ga0074649_10346763	F082617	N/A	MNWNDITIDKIQRIEQLDEDNPIRKVAYTIAIIKDVPIEEINKWTIDQLREVDLSFLNEIPQKNLTFKFKHNGRRFRLIKSAREMSAHHFIELQELANKDKIEALHEIIGCLSYRVNIFGQKIEDDYTWKVENFKSLPIVNFYNYALFFSALYPKLLNATLTYLKEETEKAKAMSSDGLVS*