Scaffold Ga0074649_1024369

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1024369
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3277
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081085	Metagenome / Metatranscriptome	114	Y
F103043	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_10243698	F103043	GAGG	MKSHSKETLVLFTLAIANSPLTIGDLAFRSGVSYNTVKKIVAADERVSQVGTHPMMYYMAKPDVLDEQVIRLSGDKPIEGWVKWFAKVSPKLAQFVRIDKTASSEDVQKQGIVLEALGSNLILAGRELQKHSEQPDWFTLIGGDEND*
Ga0074649_10243699	F081085	GGTGG	MIDDEFIADNEFFVDDLYDMDEVQLRKEIEQYARLARRYPHPTTRNQMAYQFAYLRHNEAMKILEARSSNG*