Scaffold Ga0074649_1022598

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1022598
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3483
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F005585	Metagenome / Metatranscriptome	395	Y
F013317	Metagenome / Metatranscriptome	272	Y
F014613	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_10225981	F013317	N/A	ARTGSKTLYINATPKGVYQFDLGAINEPEWALKRLPVTTDFANRETNERLAGFLDIRLADLLLV*
Ga0074649_10225983	F014613	GAG	MLPNLSDEAVVGIIIGVPFIGLYIWGLITSAKAKAFNEGYKRGRSSVRYTEILK*
Ga0074649_10225984	F005585	GAGG	MATRGTIFYAFSKSRQLSVFSSETHLNWHLLLLRQNSQEWWKVQSARIRISISLDMPLSWLDADSLHQKIGTTLSLTRNHNKNQYCDYCKYRWGQNKGVWDIRATTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAINDFAGREKLNVELP*
Ga0074649_10225985	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVSEIANQLGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK*
Ga0074649_10225986	F000545	N/A	MRSDAHPFICSACKLVTPHIELHKYDASDIAEAPEEVWLVECQRCFMQRIIYPADRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLESISERYWTGNETLERPYNAAL*
Ga0074649_10225987	F002241	AGG	VESLETQPNPLQRRRLGRKGQMSKPHSIRYIRQLMEWGFDKEFIAKDCGINLESLETRLRRANERERRNGNQGTESGTSGSQPNS*