Scaffold Ga0074649_1021782

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1021782
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3594
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F007417	Metagenome	351	Y
F012117	Metagenome / Metatranscriptome	283	N
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_102178210	F012117	GGAG	MVDILGGMSNPNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKADGFEYHWDNKFGVVSPKPADDYKRAFSAWVFPQGAQHAYLWQRFSYAESSAFNSLLATFWNQMDASSASLPVVKFEGSKPIQVGMGNSSQLTFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF*
Ga0074649_10217822	F007417	N/A	MTRYTLQVQLPSLGWVVAIKTSDLFYMARKRARLIKEGHKVKLTKEKK*
Ga0074649_10217824	F034894	AGGA	MNVTFNLIGGGELNIPPRVISGFYKCHYTGDVIVEVNGDEYKVRDSLDEIKYILGIAR*
Ga0074649_10217826	F013088	GGAG	MDEKTKKALWIPEELHKDIKIFAIKNNMNIESATQLILKLGMVSYKENNHGSK*
Ga0074649_10217827	F018155	GAG	MGQNKAAVEKRRKELEAEKLDKQIKTYYFQKGAGKHYREITYMSGKVVRTDYNA*
Ga0074649_10217829	F006845	AGG	MKSYKEQMDLNSYLLEQDFEEYCRFAFERIQSACDFLGIINDEDFESFKERCYSELEANYLNSIEKTIH*