Scaffold Ga0074649_1018943

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1018943
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4046
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053982	Metagenome	140	N
F054452	Metagenome / Metatranscriptome	140	N
F061389	Metagenome / Metatranscriptome	132	Y
F079390	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_101894311	F053982	N/A	MKKKHRMHYYGVLTTYNPYDDTWYAFHKDDISKYFTERNSIIAGSAKDAMSAINDYLSKKISISLS*
Ga0074649_10189432	F061389	N/A	MNPGTVFNLKAHEQRADIEIFVCEEPDDEGKEFWLSKGFILGEFEDGYKPLCWTQDLFLVI*
Ga0074649_10189435	F054452	N/A	MSDELKMCLLKELMFGKDVWDHEHNEEIMMLHDFGFVKLYDDNMQFAATTEMGIEELARLIKLYFVFLN*
Ga0074649_10189438	F079390	N/A	MDKPKNFKELKKRLQPFVNMDNQVRLNKESVVTNVGQVIDTHVKILEANSGNAGYMPYYDRLVMLLTILESGWE*