Scaffold Ga0074649_1017613

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1017613
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4301
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061677	Metagenome	131	N
F061811	Metagenome	131	N
F064578	Metagenome	128	N
F079882	Metagenome	115	N
F091643	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_10176132	F061811	N/A	MDIKKLTDKELSTLIKECRQELEQRKQSLEDVLLDDDFQKYKSKYARLTLFYDFCRGVYSVTESQLKEKNQSKKKRNIRNAVINYLLTQGFSHQDVVDEFDLARTSLSSPISYHEKYYKLDKSYTDIYNDVMTFFED*
Ga0074649_10176134	F079882	AGGAG	MATIKQISLIEPQMAIFLIKKLLPLIHDEAISEAINKLSDEDFEELVNILMWLGYEEKTINEILK*
Ga0074649_10176137	F061677	N/A	MSNERQFSKTIVLCSLLDLALEELAMSKEFKRRTKLYKGVLERELKRQQLAVELECGKEVADDGLAAQNQLTLQIDYLLDVVFGIRENKELVKEIERHLLSD*
Ga0074649_10176138	F091643	N/A	MKAGSKVKVYLGNVAACYGVATGRAKKMNGVTIYELQECEPFDTWDADYFRDATDVSFDIKFAKEIKTFNNGKRVYLNTGTFNYHKMKKECFKYEQKTLF*
Ga0074649_10176139	F064578	N/A	MSTESKKQAFIQGIQDGTFQGDAATIYNLIQDNHVMTLPEISVILDKSLNQFSGRISELLDAGLIKEMKGDKYSLFRITQSDQERYECAKMRYNEKIEKLRKKADELGYFLVKKMW*