Scaffold Ga0074649_1011710

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1011710
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6002
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F009001	Metagenome	324	Y
F048963	Metagenome / Metatranscriptome	147	N
F057323	Metagenome	136	N
F068778	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_101171010	F009001	AGGAG	MSVTIYLTDHNGRKVAFFYRIDNERYLTCPQLIWACRQHPEYQGTAESKEDFIEQAKGVMKQLNRSLPVRETKTCTECGLSLQGMENEGTTCNDHNFNR*
Ga0074649_101171011	F057323	N/A	MKILVLTIRAHGEEDDIYVFDNREVNVLPTIKEWLKDNDIKITLPDHVTDTDSFMDWFYASENSLEDCYDFFVSLQYKELLSE*
Ga0074649_101171012	F068778	N/A	MNYLILNIGNKNIVDWGVFAEVEDSTDSELTQQIELVLPDHIQQEIYKLITDNIDQAKAVEAMAQF*
Ga0074649_101171016	F002528	N/A	MKKTPKTTITTLPSSEDLPIIKIVSEEEEMHVNLGLEMEKETHDMLVKWGKEVASDEDYVRIAIDAGIREAVDALHSSC*
Ga0074649_10117102	F048963	GAG	MSENYAEFEPTDFVFDWSSIDHDEVKKGFDFFYANNQITGFKMDENGNYVRDQDGNLIAYRTSKQRHQPKSWFNNYYQ*