Scaffold Ga0074649_1010625

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1010625
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6483
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F008078	Metagenome / Metatranscriptome	339	Y
F049620	Metagenome / Metatranscriptome	146	N
F051874	Metagenome / Metatranscriptome	143	Y
F061663	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_101062510	F051874	N/A	MTILESIEQKVAIAVEAINAILPEGYFTTNTISSTNFGNSGYIVIKKVCPVDYIVQICKVRISDHYATNSVREATEIMIDQLRFNLDELMTRVERAMFPERYEQVQIRTLTGDILTSNFQVGRKPYTTLTEPTFLGEVIGKKGNLLHSYSWMKEDVRYEWRKK*
Ga0074649_101062511	F003786	N/A	MNLTKYQPHNQDEQAIIESRPNRIANIEPKDAFRNVLNVISTIFPLHGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLIYRRKIIAAHDNEVAALRHNANMEEKARKTREELYANFPTMLKEFKGKDFTTVPLYWYDMCIQFNMIEYEEGEKRALWEEAQAIALKEPPESMDLLTLRSHAKKIEQGNTRRAVVIAQQLAVWRKVLKR*
Ga0074649_101062513	F008078	N/A	MTPKEKANELFTHYHNLIQDIGGELGQEILVSILAKHCALFAAREVMKVKWYFETENSHDDYYFWEEVEHEIENYEE*
Ga0074649_101062515	F061663	N/A	DGSNCKKLVTWLKKVSASEQAPEDMVQMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFIYASPMAKEKKRQEEIDKLVNEFTL*
Ga0074649_10106255	F002778	N/A	MKEWNSKMLEISAFCEEVNAWITTAPSAELLDECDEYLRQLSAYYSRYTVISGMNESIFAHLMMSCIRDMPEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVQKLLLVTSDNYRTLLSSFRQERILVGHMTT*
Ga0074649_10106259	F049620	N/A	MTPEERDEKIVSILTKICINVLVKNLFDKNGVRVYEDVLHELNQLPLNEEEYTRCNHAHAFLHKTAIEYLQKTIVFNEEHRNK*