Scaffold Ga0074649_1007340

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1007340
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8704
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y
F003482	Metagenome / Metatranscriptome	484	Y
F018105	Metagenome / Metatranscriptome	237	Y
F027318	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100734010	F018105	N/A	MSYALDTPYSSQVIFLNSENSVFKQINGQGNYTYSFSTPIMLPTNCEMLISITDATLPNVIPNVTSSNNKISFYIPTFSKYFTITLQEADGTIDKVYNVTEWLSYVNAAIVTESANQFTLYGEFQQSTSKIKWFSNYSFQIINTNSYVTNCFDLIGFAKTRTNLPAYYDEDNNILLNATTNPSYHITMPSIINFSGTRFIFVKFTDISVPNLNSTGTTDNAMVRIDNNSPYGYYIFYRPMEVQRFVIRKRTINNIAFTLTDTKGEALNIFSGDAQITLKIDFKYKPELRSMEEGTIQYELRKLAQIPKLNQGEFEGVYNPETNQFVRE*
Ga0074649_100734012	F027318	N/A	MAMHQGTMKLTPQQANVIPAGKYIYTDETFLVKQPIASVEAFPRQGKQLVPAYFSFNHNPGSEFTPVYQPAPSMTMNFGTYIFNSVDGYQ*
Ga0074649_100734014	F001894	N/A	MSPKVNEAAKIAKIHYIYQQRPNKERADNLAKRKLGRLGYELDSANTNKDVLTATRANNVHINYTGTNVNNPRDILSDVALGVGVQRSNQDFKSRRKQTRDIMRQYGDDKDYSLSGHSLGGSHALNNMSQSKSIRDRVKSVHIFNPGYTLPFHNSIKVNKETKKELDKKVNVHRVKSDVVSAHANKETAFGNLFEYKADKDADLFDKHSLENFTTVDL*
Ga0074649_10073406	F003482	N/A	MDDELHEKLLDLKVAKDFKETIKNTKNLIKRDTQDIPSLNDLGDLNKGNWVEHDEGNFAKMFEGLLDYCADEEEYDNLDWNTVNYQVYGADYYEEKFPGFSEEVYEILAKSTEEENKIIDNRIPPIEIKHGEFTVSFD*