Scaffold Ga0074649_1007272

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1007272
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8769
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018714	Metagenome	233	Y
F034175	Metagenome	175	Y
F044304	Metagenome / Metatranscriptome	154	Y
F093779	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100727214	F044304	GAG	MNTLDTTKLYLTDRQTSIINVALTNLYDVIPMGHGTKMRDDIMELSKYIQKQYQYYHD*
Ga0074649_100727218	F093779	GGAGG	MKIEITQDISGTGDYRWILYTGPEHIDEYTGYCYTLGECFELIVKWETLNAQKYYGGTENV*
Ga0074649_100727223	F034175	AGG	MIYKPPVEARVQQLEEENVETSNMLYELNVDIDMLKERLKTLENLILGDGK*
Ga0074649_10072724	F018714	GAGG	MTDYEYQKTLMIGAIIGACFTLLAFYMLKPSPENHTVTPKTNFAVVDTYKGCDVVQWDNGSFAEYKYFLICKDK*