Scaffold Ga0074649_1006550

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1006550
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9541
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017124	Metagenome / Metatranscriptome	242	Y
F033777	Metagenome	176	Y
F066593	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100655019	F017124	AGAAG	MKITLESYDYTCADGCCYTTGYDVYVDGKKIGFTTGEDATELAELLNEHFETEAK*
Ga0074649_100655026	F033777	N/A	MKIERYTQAYEFFITPTIKCTYDKQLFGWYCIDVIWGKWGLSLSWG*
Ga0074649_10065505	F066593	N/A	MKIEVNYIFREGNVDPLYERLGIEVDAEVEIEERGVLDLSEVVGASEFYELTQVYLRGGHIFFISLSFDEFKILWMQ*