Basic Information | |
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Taxon OID | 3300005613 Open in IMG/M |
Scaffold ID | Ga0074649_1006550 Open in IMG/M |
Source Dataset Name | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9541 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (19.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 25 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F017124 | Metagenome / Metatranscriptome | 242 | Y |
F033777 | Metagenome | 176 | Y |
F066593 | Metagenome | 126 | N |
Protein ID | Family | RBS | Sequence |
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Ga0074649_100655019 | F017124 | AGAAG | MKITLESYDYTCADGCCYTTGYDVYVDGKKIGFTTGEDATELAELLNEHFETEAK* |
Ga0074649_100655026 | F033777 | N/A | MKIERYTQAYEFFITPTIKCTYDKQLFGWYCIDVIWGKWGLSLSWG* |
Ga0074649_10065505 | F066593 | N/A | MKIEVNYIFREGNVDPLYERLGIEVDAEVEIEERGVLDLSEVVGASEFYELTQVYLRGGHIFFISLSFDEFKILWMQ* |
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