Scaffold Ga0074649_1003438

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1003438
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15753
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030153	Metagenome / Metatranscriptome	186	Y
F033765	Metagenome	176	N
F050336	Metagenome / Metatranscriptome	145	Y
F052939	Metagenome	142	Y
F062256	Metagenome	131	N
F091971	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100343818	F030153	GGGGG	MSLIVDFTNIREDAKNELNQYQEMIGYYMMAIGMGEITEKNHLEVYARLVLLQASTLDDRKPWITLRMVKGLINARFNIAFESKAKFSSRMMKATLREVERLEAKEVKDVA*
Ga0074649_100343819	F091971	N/A	VNLEIDKMNKLNQLFEPSRQVGSDKKYRHIVKGQMIQGDELEVNGVRRSFWSNPNGTYSCHMWNVSQGKVIDQITVDSFDGEDLQEFQLRTQDILWGV*
Ga0074649_100343823	F050336	N/A	MTLNQAKQKVLDMNNETLQNFVNQRKGNDSELSNFARNELADRNSLNAWQDGSLINMDAINKLSLGDLERVAKILDKVK*
Ga0074649_100343824	F062256	N/A	MICFLINFGEVKQMNINPKQNEIYAKRSVNIGDASVDIDILIPDKLAKHGWRAMILPKDFYDPNTRLGKMLNKAIADYLAESDEYVVFGMNKDGSLK*
Ga0074649_100343825	F052939	GGAG	MNIEQKILHQIWDTLMKNGKCPDYFNFATDLRYDHSINYNPDDPTISLVVEKAGRPTTYKISINEVKNEIIT*
Ga0074649_100343826	F033765	GAGG	MKSLLRTILDECEKNKLMYRANAYDLWNNGCEDMIVPWGYDFEALTETMKAFELDERLGNIQIIPEGKVKTHIELIDSIRSSFLEYSSEDEERVLIQNLTDEQIISESPDEYYSGHMWIMWTNYGGNEHLDCFTDYTTSLDKYFDVSELTNEWEDQYNEFKLGLI*