Scaffold Ga0074649_1002864

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1002864
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 17751
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003482	Metagenome / Metatranscriptome	484	Y
F004242	Metagenome / Metatranscriptome	447	Y
F018105	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100286410	F004242	AGGA	MRIGLKKPHMNRIGLKKMAHTTSRLGLKASDIAMAMAPVVAMAGPEALPVASALEAAGGTGKAVFGLASKIV*
Ga0074649_100286411	F018105	N/A	MANYTLDTPYSNQVIFLNSQNSVFKTIDGVGEYTYSFSTPIQLPTNTDMLISVTDAQLPNVIPNITSDNNQISFSIPTFSKTFTITIQDSNGDVDKVYNVTEWIAFVNAKIVIEAVSQFTLYAEFQTTNSKIRWNCNYPFQILNTASYPTTCIDLIGFSKNGDNSVVYQDEGNGVLLGSSVNPSYHIQMPSIVNFAGTRFIFVKFKNLSVNNLNSGGNTDNAMVRIPNNAPFGYYIFYRPSEVQRFISRKRTINSLSFRLTDTQDNDINIWSSDAQITLKMEYMYKPDMRSHEEGTINYELRKLGEIPKLTAKEFEGSFIPQTSSWIRE*
Ga0074649_10028647	F003482	N/A	MDEKMKELMIERGFKQTVDDSKKLIKRDTQYIPTLDQLDNDNKGQWVEHDANNFMKMFDGLLDYCADEECFDSLDWNTVNYTVYGADYYEEKFPGFAPEVYEILAKSTEEENKVIDNRIPSLKCTPGTFTVTFD*