Scaffold Ga0074649_1002089

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1002089
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 22098
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (72.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029592	Metagenome / Metatranscriptome	188	N
F054415	Metagenome / Metatranscriptome	140	N
F079945	Metagenome	115	N
F093726	Metagenome	106	N
F102114	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100208912	F079945	N/A	MIEYQGKKVTAKTKVKHELSDAVIAWVDQVVKNPKDVIPDWNKMTTKEQEEFERQAFLLEGKLHKVIGVQFAEIISSNSYTKKI*
Ga0074649_10020892	F054415	GAGG	MTQHTDKVEKQRELLKVEALDKEIKAIDIRPGRIQTWYQSGRVVTDYPRDKRKKKTTEYRGLND*
Ga0074649_100208921	F102114	AGGAG	MNDYTVVIKVRIPECKDKQEAIDFVADNIGLSEFNLEIDVMETEDE*
Ga0074649_10020893	F093726	N/A	MVNHYTLGGQIMTYEIAEYKYATHMKSVYGLVGDIEYPSRKHSQQDGEGNWILVSYNGHKMGKVLTNGKVIA*
Ga0074649_100208931	F029592	GGAG	MKQLDQIKKLQDQLEVLGEVPQVREFLEINKMISSLRSSVRNEILNHMILKDNGLGVRQTLSSFIEDHIIDAHLSKDKKTFSGVLKGDKTLATFRLSHRSPYEMKASSMLKIEGWS*