Scaffold Ga0074649_1001797

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1001797
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 24788
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (77.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042576	Metagenome	158	N
F048280	Metagenome	148	N
F055692	Metagenome	138	N
F084117	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100179716	F055692	N/A	MPKQHKSIEFLCFTAPDYSRVVKVDMAELHTIVQGYQRIGDPAFMSHQNTITPESKALEIYNKFAKRKLKNFKNKKDCQIKLWNLFSKMAVKPEETDMSRSKVFKIDRSKPKPDPLCKVISARDPYDTSQKLTRTNKMPMASKNIERMKQYENIKTIQDVLDKGVLDIRAIKYDIKLGYVVKG*
Ga0074649_100179729	F042576	AGGAG	MANKTATQKSMLSSAKTQTETATTTPKMKFGKYSPDAKLKATGKRVTAEHNNERVKAVNGKTIKEAIATGLYTMSGIRYDIEKVKTLEIA*
Ga0074649_100179745	F084117	AGGAG	MSRLKDIMIDAQATAQCLIHGEGYTYRMFISTMKEDHPACPSDYFDTLWNEEMKERWEKTLSLKGLMRSKLK*
Ga0074649_100179749	F048280	N/A	MRDYLKSITEVCPFSLKHFDNGEIPILHYSEPLVRELYTELDKYPAILFKVHSTVCRHVLESMAHELADEYPEAEWFWSHPSEGGTSTVVPVLIMQNREHLANARK