Scaffold Ga0074649

Basic Information
Taxon OID	3300005613 Open in IMG/M
Scaffold ID	Ga0074649_1001416 Open in IMG/M
Source Dataset Name	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005613 Open in IMG/M

Scaffold ID

Ga0074649_1001416 Open in IMG/M

Source Dataset Name

Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	28992
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (75.44%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28992

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (75.44%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017422	Metagenome / Metatranscriptome	241	N
F044149	Metagenome / Metatranscriptome	155	N
F044429	Metagenome	154	N
F057324	Metagenome / Metatranscriptome	136	N
F060425	Metagenome	133	Y
F067233	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100141614	F067233	N/A	MKSRRTEMSNLDVRNCEVCKTNFDWNNELAGCLDIEEILDCSDTQINKWQEQNKNIDLQSYFCSECADKTIQAIEENENE*
Ga0074649_10014162	F060425	GGA	MDIQKSRILHAELKNGSNYKYLWLGNDHFADLFNSWDFESNEGKYEGMLDFDYTVSFTIEMDEIKDEKSIIGMSFDEGLEDSEIVDFTLEDINWENN*
Ga0074649_100141624	F057324	GGGGG	MNINDDLVKDWLDKFDSNNEITLLTEIANNNICVSGMIDSILAYHVGEVEIAKDFYKRMWRSQS*
Ga0074649_100141627	F044429	AGGAG	MSELPPIEDRMPECEWVLVIKYGDPYTNTPLTTGFGPFKTKEEADDFRAQYYYDQIVIADIVPINAVLPQSATELDIDFIPEGKVVDISSKINPHKH*
Ga0074649_100141638	F044149	GGA	MDNLETITDPIEEVLELMVKHQLAVVADKKLDLVKAIRRLQRQLAKTKETNKNFNEQWKFLHDAHEDLMGQVERIYGV*
Ga0074649_100141654	F017422	N/A	MNLTLEKVEPTPENGKRIADFLAEHFWAEHSLSGEGSPPIEWGRASSHINHFLFEGIVYNVLDGDTIIGSIAAGPDDYWWSAEQYVRDGWFYVLPEYRNLKNKIPPSHLLIDAVIEYAKEQDKPLILGIFNLKGVERAKKLFDKKGFHQIGGMYYRE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074649_1001416

Overview

Ecosystem & Geography

Associated Families

Sequences