Scaffold Ga0074649_1000886

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1000886
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 38002
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (36.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008946	Metagenome / Metatranscriptome	325	Y
F027182	Metagenome / Metatranscriptome	195	N
F047629	Metagenome	149	Y
F064619	Metagenome	128	N
F085541	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_10008863	F064619	N/A	MSVTTILKSLDGKRDIRFCHYLESDRSHALPKLMWKCVSYPEYQGEAMSKEHLQECFKDTLKLLHVKLNKTND*
Ga0074649_100088635	F008946	GGA	MPLRPRPVIHPLAFQNRTLAVTAAAEAKQNEDKATALEQQIESLESDPFFVTIDGGGPVLEDTDIFDGGSIDA*
Ga0074649_100088637	F085541	N/A	MSVWYQMGQSVRNLLISLTSTSQAILDTESNITARTGDTLGTMAFATDTSKLYVFTESGWVHAQ*
Ga0074649_100088638	F027182	N/A	MANILQQIGQTVKSKLDDKVDKTDAVTDFLKSILGFPEDTVAPSVDTSTNIAARTSDDTGTIMYASDTYDLYVFDGSNWQIFNNS*
Ga0074649_10008864	F047629	N/A	MTDCLQCGLSLQGRDNEADTCSDCLLEEALSNNVSKDDMSVSDKGITDEQYKEPIMNNTITEEILLDPIETTEALMLHIFEAEFGGELDPNHRFFELYLQLQLLKEKMLKDEEDAYVSVDGESLSNEVSKGDMSVAIYNDEVGA*