Scaffold Ga0074649_1000122

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1000122
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 96536
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (80.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F010910	Metagenome / Metatranscriptome	297	Y
F058817	Metagenome / Metatranscriptome	134	N
F078367	Metagenome / Metatranscriptome	116	Y
F083943	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_1000122100	F078367	AGGAG	MINIFIWCIYGIFVGSIAKSIVPGEEKMGFFQTVALGVSGSYAGGAISYLLGMENVLSAGGIIMGVGGSVLALLVYNKIVK*
Ga0074649_100012215	F058817	GGA	MTTTTKENAMDDINTTLLIAALEAEGIVEPIDDIGSHPLDWMDVVGVDLFDECWTPEEAY
Ga0074649_100012216	F010910	GGAG	MLTLCTIFGMVVGFEGFENGKVYVGVYTPNMEYGYVITKDEIYLDTIFEKY*
Ga0074649_100012246	F083943	AGGAG	MADLPILNAVEPTVIPAKTYDRVWVEEIVIRAPDPNGDVTGEVKLHKYGMFDGVAELEPGNGQWIRVENMLAKSAEDTDLQTAMTALLAYVGKVGVENNIIQQ*
Ga0074649_10001228	F000325	GGAG	MKTANGNDKLGKENCIVVSRPVGDTCPSSCDFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAKRKGKAIRFMERGDWFLNGELDVDFVDNVAWACESIVSNGGKLPKMWFYTHVYDDRIPAKLGKYFSIFASVHNENHMNEAKSKGFTKFAWCDSDQKIAPKRPRSKVKADAWRKSLPKLVVLGGEKFVTCPEIRRGRGVVTCTPTKNSIGCNMCLDKEKPNVLFPCH*