NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070723_10485129

Scaffold Ga0070723_10485129


Overview

Basic Information
Taxon OID3300005612 Open in IMG/M
Scaffold IDGa0070723_10485129 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)609
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019663Metagenome228N
F025147Metagenome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0070723_104851291F019663GAGGMSKSTYPTKYQLEHLKKRINNEIDPLIEQAQLSVKSIVADLTESAELKLAKKIKADVVIKELEEAIENLQIKQRKAQTFFGKIKDPD
Ga0070723_104851292F025147N/AMSIEKIIKCPSADTCNLQDYNFKGRPKKDNSKKGDIFQNCRCCGEYIRGDFRSNLDGRYCQDCL*

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